PIMA Multiple Sequence Alignment Results

Maximal Linkage Clustering

pat-ML (((3 163.00 4) 116.67 (2143.00 5)) 74.71 (1 110.68 6))



Page 1.1
             1            15 16           30 31           45 46           60 61           75 
    1 pat-ML --------GXmEXXf cXcLXrgpggggrXr cgXXfgggdXXXXXp XcXXrcXXXXiGXfp pXb---     55
    2 3      LHAAMKGLGTDENAL IDILCT-Q---SNAQ I-HAIKAAFKLLYKE DLEKEIISETSGNFQ RLLVS-     60
    3 4      LRACMKGHGTDEDTL IEILASKK---NNKE IREACR-YYKEVLKR DLTQDIISDTSGDFQ KALVSL     62
    4 2      LHAAMAGIGTEEATL VEILCT-K---TNEE M-AQIVAVYEERYQR PLAEQMCSETSGFFR RLLTLI     61

    5 5      IHSACAGAGTNENTI IEILVT-K----NVQ M-EYIKQIFKNKHGK SLKDRLESEASGDFK KLLEKL     60
    6 1      LHKGIMVNGVDEATI LDLLTK-KYNAQRHH L-KAV---YIQETGE PLDETLKKALTGHIQ ELLLAM     61
    7 6      YEAGELKWGTDEAQF IYILGN-K---SKQH L-RLVFDEYLKTTGK PIEASIRGELSGDFE KLMLAV     61

Sequential Branching Clustering

pat-SB (((((3 163.00 4) 158.00 2) 143.00 5) 96.00 1) 86.68 6) 



Page 1.1
             1            15 16           30 31           45 46           60 61           75 
    1 pat-SB --------GXmEXXf cXcLXrgggrXoggg gXXfgggdXXXXXpX cXXrcXXXXiGXfpp Xb---     54
    2 3      LHAAMKGLGTDENAL IDILCT-QSNAQI-- -HAIKAAFKLLYKED LEKEIISETSGNFQR LLVS-     60
    3 4      LRACMKGHGTDEDTL IEILASKKNNKEIR- -EACR-YYKEVLKRD LTQDIISDTSGDFQK ALVSL     62
    4 2      LHAAMAGIGTEEATL VEILCT-KTNEEMAQ IVAV---YEERYQRP LAEQMCSETSGFFRR LLTLI     61

    5 5      IHSACAGAGTNENTI IEILVT--KNVQM-- -EYIKQIFKNKHGKS LKDRLESEASGDFKK LLEKL     60
    6 1      LHKGIMVNGVDEATI LDLLTKKY-NAQ--- RHHLKAVYIQETGEP LDETLKKALTGHIQE LLLAM     61
    7 6      YEAGELKWGTDEAQF IYILGN--KSKQ--H LRLVFDEYLKTTGKP IEASIRGELSGDFEK LMLAV     61

Maximal Linkage Alignment Data (Fasta format)

>pat-ML
--------GXmEXXfcXcLXrgpggggrXrcgXXfgggdXXXXXpXcXXrcXXXXiGXfppXb---


..etc

Sequential Branching Alignment Data (Fasta format)

>pat-SB
--------GXmEXXfcXcLXrgggrXoggggXXfgggdXXXXXpXcXXrcXXXXiGXfppXb---


...

------end of PIMA results-------