FINDING DOMAIN AND FUNCTIONAL SITE HOMOLOGIES WITH DATABASE SEARCH

      This is a simple exercise: find functional predictions by database search. Here you find a number of protein sequence examples in one-letter form. Copy one of them and submit it to the following e-mail server:

      SBASE

      DOMAIN

      Sample sequences for domain and function identification

      1. 

          ELHKGIMVNG VDEATILDLL TKKYNAQRHH 
LKAVYIQETG EPLDETLKKA LTGHIQELLL
AM

      2. 

          APARSCAEEP CGAGTCKETE GHVICLCPPA 
YTGEHCNI

      3. 

          APTEQRPGVQ ECYHGNGQSY RGTYSTTVTG
RTCQAWSSMT PHSHSRTPEY YPNAGLIMNY
CRNPDAVAAP YCYTRDPGVR WEYCNLTQCS
DAEGTAVAPP TVTPVPSLEA PSEQ

      4. 

          LRVFVERQAA PLQLAPNVSA LLRWDVPEEH
AGSQSLQYRI SCWRGSELHS ELLLNQSTLE
ARVEHLQPEE TYRFQVQAHV AATGLAAGAT
SHAL

      5. 

          YHCAGNGSWV NEVLGPELPK CVPVCGVPRE
PFEEKQRIIG GSDADIKNFP WQVFFDNPWA
GGALINEYWV LTAAHVVEGN REPTMYVGST
SVQTSRLAKS KMLTPEHVFI HPGWKLLEVP
EGRTNFDNDI ALVRLKDPVK MGPTVSPICL
PGTSSDYNLM DGDLGLISGW GRTEKRDRAV
RLKAARLPVA PLRKCKEVKV EKPTADAEAY
VFTPNMICAG GEKGMDSCKG DSGGAFAVQD
PNDKTKFYAA GLVSW